Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014561: Pantoea vagans C9-1 plasmid pPag1, complete sequence

NCBI: NC_014561

Host Lineage: Pantoea vagans; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple. Strains belonging to this species have been isolated from eucalyptus leaves showing symptoms of bacterial blight and die-back in Uganda, Uruguay and Argentina and from maize suffering from brown stalk rot in South Africa.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1769319459917669Island text1.6268528.207120.3192Neighbours41BLASTN+76931.gbk
215314317999926857Island text1.5454928.176718.7904Neighbours51BLASTN153143.gbk