Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014551: Bacillus amyloliquefaciens DSM 7, complete genome

NCBI: NC_014551

Host Lineage: Bacillus amyloliquefaciens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Originally isolated from infested soil in Germany. Bacillus amyloliquefaciens is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Bacillus amyloliquefaciens is able to degrade myo-inositol hexakisphosphate (phytate), making phosphorus more available to plants. This organism also produces antifungal and antibacterial substances, such as bacillomycin D, surfactin, and bacillaene, which protect the plant from pathogenic organisms. In addition, proteases and amylases produced by Bacillus amyloliquefaciens are used in industrial applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1157418*18251925102Island text1.9787445.353.2808Neighbours344BLASTN157418.gbk
2199500*22638026881Island text4.1977437.83221.1253Neighbours21BLASTN+199500.gbk
344213546231420180Island text1.7978832.323125.0112Neighbours31BLASTN+442135.gbk
4483773*50659922827Island text1.9285532.193314.3594Neighbours21BLASTN483773.gbk
557600060197725978Island text1.6112630.666348.5504Neighbours21BLASTN+IslandViewer 576000.gbk
660585563612730273Island text2.3585236.694829.4024Neighbours21BLASTN+IslandViewer 605855.gbk
7691594*71409922506Island text1.7532833.146922.0124Neighbours21BLASTN+691594.gbk
8809025*83667627652Island text4.1826440.315216.1126Neighbours21BLASTN+809025.gbk
986525490653841285Island text1.7247732.606232.9333Neighbours21BLASTN+IslandViewer 865254.gbk
101279229*131159932371Island text3.8838238.3120.1169Neighbours21BLASTN+1279229.gbk
111872000190259930600Island text2.00632.165915.6344Neighbours21BLASTN+IslandViewer 1872000.gbk
122057971208432426354Island text2.0740935.932419.9688Neighbours21BLASTN+IslandViewer 2057971.gbk
132510000*255960649607Island text1.9506233.563420.8552Neighbours21BLASTN+IslandViewer 2510000.gbk
143515462353692021459Island text1.868731.375629.6504Neighbours31BLASTN+IslandViewer 3515462.gbk
153797047382235125305Island text3.109636.929321.5935Neighbours21BLASTN+3797047.gbk
163864127389564031514Island text1.9622635.329520.7431Neighbours21BLASTN+IslandViewer 3864127.gbk