Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014550: Arthrobacter arilaitensis Re117, complete genome

NCBI: NC_014550

Host Lineage: Arthrobacter arilaitensis; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: An aerobic, non spore-forming, non-motile, Gram-negative bacterium isolated from the surfaces of smear-ripened cheese (French cheese "Reblochon"). Arthrobacter arilaitensis is one of the main bacterial species found at the surface of cheeses, especially in smear-ripened cheeses, where it contributes to the typical colour, flavour and texture properties of the final product.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17560*3657129012Island text1.5365824.258321.0501Neighbours11BLASTN+IslandViewer 7560.gbk
230189431961117718Island text1.6213123.662514.1004Neighbours11BLASTN+301894.gbk
361560964045524847Island text1.4869525.334421.5434Neighbours11BLASTN+615609.gbk
4786692*81013423443Island text1.7821427.629833.646Neighbours11BLASTN+786692.gbk
588950091578326284Island text1.9693127.465224.1155Neighbours11BLASTN+IslandViewer 889500.gbk
61487062150515118090Island text1.5014524.513627.9937Neighbours11BLASTN+1487062.gbk
71581812*167775695945Island text2.1785131.485124.3929Neighbours11BLASTN+IslandViewer 1581812.gbk
82013422203695423533Island text1.4099625.820832.5496Neighbours11BLASTN+IslandViewer 2013422.gbk
92091797*212997638180Island text1.5859224.677328.9051Neighbours11BLASTN+2091797.gbk
102314359233407919721Island text1.4664525.860340.4556Neighbours11BLASTN+IslandViewer 2314359.gbk
112355500237821322714Island text1.4955128.252727.1897Neighbours11BLASTN2355500.gbk
122562053259431732265Island text2.001928.356745.2896Neighbours11BLASTN+2562053.gbk
132835696*285851122816Island text1.3760625.644535.0774Neighbours11BLASTN+2835696.gbk
143263783328159917817Island text1.4805124.440735.2601Neighbours11BLASTN+IslandViewer 3263783.gbk
153316115336737851264Island text1.9124928.283533.939Neighbours11BLASTN+IslandViewer 3316115.gbk
163377834343359955766Island text1.8431727.31644.0981Neighbours11BLASTN+IslandViewer 3377834.gbk
173534000355722823229Island text1.5006527.352922.4875Neighbours11BLASTN+3534000.gbk
183839389*387099931611Island text2.1630532.229730.6027Neighbours11BLASTN+3839389.gbk