Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014549: Arthrobacter arilaitensis Re117 plasmid pRE117-1, complete

NCBI: NC_014549

Host Lineage: Arthrobacter arilaitensis; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: An aerobic, non spore-forming, non-motile, Gram-negative bacterium isolated from the surfaces of smear-ripened cheese (French cheese "Reblochon"). Arthrobacter arilaitensis is one of the main bacterial species found at the surface of cheeses, especially in smear-ripened cheeses, where it contributes to the typical colour, flavour and texture properties of the final product.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1140003908825089Island text1.7215228.533934.582Neighbours11BLASTN+14000.gbk