Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014540: Burkholderia sp. CCGE1003 chromosome 2, complete sequence

NCBI: NC_014540

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Environment: Host, Rhizosphere, Rhizosphere-colonizing; Temp: Mesophile. Burkholderia sp. strain CCGE1003 is a free-living rhizosphere-colonizing bacterium.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11835493185699121499Island text1.9839228.848536.8051Neighbours11BLASTNIslandViewer 1835493.gbk
22828299285792229624Island text1.7725722.842728.0008Neighbours11BLASTN+IslandViewer 2828299.gbk
32908912*292949720586Island text2.2472326.881235.7961Neighbours11BLASTN+2908912.gbk
42933853297349939647Island text2.0565329.863839.3714Neighbours11BLASTN+2933853.gbk