Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014539: Burkholderia sp. CCGE1003 chromosome 1, complete sequence

NCBI: NC_014539

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Environment: Host, Rhizosphere, Rhizosphere-colonizing; Temp: Mesophile. Burkholderia sp. strain CCGE1003 is a free-living rhizosphere-colonizing bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113466034660Island text2.1087928.544122.5753Neighbours11BLASTN+IslandViewer 1.gbk
274352378980446282Island text1.502621.589617.9579Neighbours11BLASTN+IslandViewer 743523.gbk
386040288458924188Island text1.5348722.42622.3878Neighbours11BLASTNIslandViewer 860402.gbk
488856291210823547Island text1.6205119.20118.4697Neighbours11BLASTN+IslandViewer 888562.gbk
51839840*186410224263Island text1.6738225.285720.9809Neighbours11BLASTN+1839840.gbk
63619511*364249922989Island text2.3664329.873837.7443Neighbours11BLASTN3619511.gbk