Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014537: Vulcanisaeta distributa DSM 14429 chromosome, complete genome

NCBI: NC_014537

Host Lineage: Vulcanisaeta distributa; Vulcanisaeta; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Country: Japan; Environment: Fresh water, Hot spring; Isolation: Hot spring from Kanagawa, Ohwakudani, Japan; Temp: Hyperthermophile; Temp: 90C. Vulcanisaeta distributa was isolated from a hot spring in Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1115372*14408328712Island text1.6874730.933338.2391Neighbours7BLASTN115372.gbk
216535718965324297Island text2.9777130.370532.0724Neighbours7BLASTN165357.gbk
322211424511623003Island text1.5554831.17142.9454Neighbours7BLASTN222114.gbk
4453644*47499921356Island text1.6761629.094740.5916Neighbours7BLASTN453644.gbk
554251556524022726Island text1.601830.854940.8693Neighbours7BLASTN+542515.gbk
6603564*65059947036Island text1.7799435.374841.014Neighbours7BLASTN+603564.gbk
766321668437821163Island text1.5696229.170739.6333Neighbours7BLASTN663216.gbk
81083961110562521665Island text1.6375330.508338.1761Neighbours7BLASTN1083961.gbk
91146000*116833222333Island text1.4885529.261946.1384Neighbours7BLASTN1146000.gbk
101454618147878024163Island text1.6956628.572550.6274Neighbours7BLASTNIslandViewer 1454618.gbk
111589125*161796028836Island text2.0418632.610749.0568Neighbours7BLASTN1589125.gbk
122254061*227398919929Island text1.545830.888348.8488Neighbours7BLASTN2254061.gbk