Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014532: Halomonas elongata DSM 2581, complete genome

NCBI: NC_014532

Host Lineage: Halomonas elongata; Halomonas; Halomonadaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: Halomonas elongata DSM 2581 was isolated from a solar salt facility and is halotolerant up to a concentration of 35%. Halomonas elongata is a halophilic bacterium which uses ectoine as its major compatible solute. This organism can both, synthesize and degrade ectoine and is used as industrial ectoine producer.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111087513531724443Island text1.797224.033327.884Neighbours11BLASTN+110875.gbk
2349384*37223122848Island text2.3728129.346339.0312Neighbours11BLASTN+349384.gbk
3722151*74114018990Island text2.314325.295919.6948Neighbours11BLASTN+722151.gbk
475280777109918293Island text1.835824.894632.7415Neighbours11BLASTN+752807.gbk
5988351*100759919249Island text1.6419524.358630.1011Neighbours11BLASTN+988351.gbk
61191267*121445423188Island text1.7663524.942233.2562Neighbours11BLASTN+1191267.gbk
71307983*133509927117Island text3.2692236.625543.4032Neighbours11BLASTN1307983.gbk
81481787*151013928353Island text3.6077339.544636.2664Neighbours11BLASTN+1481787.gbk
91579419162013440716Island text4.9401347.409638.6693Neighbours14BLASTN+1579419.gbk
101713987173773623750Island text2.1415924.622727.9886Neighbours11BLASTN+1713987.gbk
111873169*189841425246Island text1.8386726.937226.6187Neighbours11BLASTN1873169.gbk
122066074209060724534Island text2.3868430.453641.0104Neighbours11BLASTN+2066074.gbk
132108897*214516836272Island text2.5352131.440337.1137Neighbours11BLASTN+2108897.gbk
142146466216923222767Island text1.7540924.945326.6293Neighbours11BLASTN+2146466.gbk
152268078229613528058Island text3.8745840.617135.6816Neighbours11BLASTN+2268078.gbk
162298628232367925052Island text2.3543635.623333.4718Neighbours11BLASTN+2298628.gbk
172664139271259948461Island text2.5577831.129930.3686Neighbours11BLASTN+2664139.gbk
182989185301261923435Island text1.5375324.835826.8973Neighbours11BLASTN+2989185.gbk
193036109306261026502Island text2.9232136.602551.3132Neighbours11BLASTN+3036109.gbk
203479674350706927396Island text2.6554433.954430.8126Neighbours11BLASTN+3479674.gbk
213555550358012324574Island text1.8456427.904324.5687Neighbours11BLASTN3555550.gbk
223596097363859942503Island text1.8888827.90625.1846Neighbours11BLASTN+3596097.gbk
233967463*399309925637Island text1.9649830.031326.5039Neighbours11BLASTN+3967463.gbk