Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014507: Methanoplanus petrolearius DSM 11571 chromosome, complete genome

NCBI: NC_014507

Host Lineage: Methanoplanus petrolearius; Methanoplanus; Methanomicrobiaceae; Methanomicrobiales; Euryarchaeota; Archaea

General Information: Environment: Oil fields; Isolation: Offshore oil field from Gulf of Guinea; Temp: Mesophile; Temp: 37C. Methanoplanus petrolearius was first isolated from an offshore oil well. This organism is a methanogen, producing methane from hydrogen and carbon dioxide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124534426740322060Island text2.2487232.1218.7673Neighbours38BLASTN+245344.gbk
2374359*40194627588Island text1.9823832.082616.2562Neighbours38BLASTN+374359.gbk
345712247633419213Island text1.5734928.984325.1736Neighbours38BLASTN+457122.gbk
4611625*65348941865Island text2.1172129.112124.2503Neighbours38+611625.gbk
5758820*78209923280Island text1.5161828.714745.2308Neighbours38BLASTN758820.gbk
681797783779219816Island text1.6007230.938722.2488NeighboursBLASTN+817977.gbk
786321090282739618Island text1.6007328.941526.8399Neighbours38BLASTN+863210.gbk
8906960*94451137552Island text1.7257928.908826.0474Neighbours38BLASTN+906960.gbk
9982000100500023001Island text1.6000430.938247.5402Neighbours38BLASTN982000.gbk
101127115114759220478Island text2.0941328.12222.0551Neighbours38BLASTN+1127115.gbk
111373325139547022146Island text1.8242628.17825.74167Neighbours38BLASTN1373325.gbk
121403000144802845029Island text3.7871936.271616.6098Neighbours21BLASTN+1403000.gbk
131558286*157781219527Island text1.7466529.047114.1887Neighbours38BLASTN+1558286.gbk
141610409*163458024172Island text1.6659531.189219.6613Neighbours38BLASTN+1610409.gbk
151797583*182054322961Island text1.5941728.173623.59Neighbours38BLASTN1797583.gbk
161861541*188467823138Island text1.5028632.034353.0942Neighbours38BLASTN1861541.gbk
172034000205588421885Island text1.7403828.90729.43176Neighbours38BLASTN+2034000.gbk
182174500*219611121612Island text2.157231.926121.8602NeighboursBLASTN+2174500.gbk
192196539*222022623688Island text1.7702632.222855.6371Neighbours38BLASTN+2196539.gbk
202276000*230195625957Island text1.5704729.950533.1631Neighbours38BLASTN+2276000.gbk
212319842234494325102Island text2.0251729.964917.9372Neighbours38BLASTN+2319842.gbk
222479221250421824998Island text1.5662932.465531.7739Neighbours38BLASTN2479221.gbk
232568933*259228323351Island text1.4547229.888139.4141Neighbours38BLASTN+2568933.gbk