Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014506: Sulfurimonas autotrophica DSM 16294 chromosome, complete genome

NCBI: NC_014506

Host Lineage: Sulfurimonas autotrophica; Sulfurimonas; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Country: Japan; Environment: Marine, Sediment; Isolation: Deep-sea sediments at the Hatoma Knoll; Temp: Mesophile; Temp: 24C. Sulfurimonas autotrophica is a mesophilic, sulfur- and thiosulfate-oxidizing bacterium isolated from deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115739617759920204Island text1.6695419.844328.7467Neighbours21BLASTNIslandViewer 157396.gbk
21482401150477822378Island text1.9335918.465428.7922Neighbours21BLASTN1482401.gbk
31803734182685123118Island text1.4315619.8233.177Neighbours21BLASTN1803734.gbk