Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014501: Cyanothece sp. PCC 7822 chromosome, complete genome

NCBI: NC_014501

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Country: India; Environment: Fresh water; Isolation: Rice fields in Cuttack, Orissa, India; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1477336*50009922764Island text1.4653229.286220.8673Neighbours21BLASTN477336.gbk
23210323323009919777Island text1.6406528.220250.6406Neighbours21BLASTN3210323.gbk
35419958544288522928Island text1.5755938.351246.1506Neighbours21BLASTN5419958.gbk
45471984*550289130908Island text1.5462733.09752.3713Neighbours329BLASTN+5471984.gbk
55775547*579548119935Island text1.5211737.664249.2569Neighbours21BLASTN5775547.gbk
65832879585675123873Island text1.4798325.814741.5154Neighbours21BLASTN5832879.gbk