Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014499: Candidatus Sulcia muelleri CARI chromosome, complete genome

NCBI: NC_014499

Host Lineage: Sulcia muelleri; Sulcia; ; Flavobacteriales; Bacteroidetes; Bacteria

General Information: This organism is a gut symbiont of the Blue-Green Sharpshooter and several other leafhopper species. It synthesizes amino acids for the host, enabling the leafhopper to live on a diet of plant sap. The Blue-Green Sharpshooter is an important vector for Pierce's Disease in plants, caused by the spread of Xylella fastidiosa.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1048210482Island text1.6974410.72075.79242BLASTN1.gbk
263365*8752124157Island text1.9878810.271817.3712Neighbours21BLASTN63365.gbk
387528*10905021523Island text2.255114.125620.6933Neighbours21BLASTN87528.gbk
4181000*19859917600Island text1.8451210.58797.43696Neighbours21BLASTN181000.gbk