Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014484: Spirochaeta thermophila DSM 6192 chromosome, complete genome

NCBI: NC_014484

Host Lineage: Spirochaeta thermophila; Spirochaeta; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Strain DSM 6192 was isolated from brackish thermal Spring RI 19 on the edge of Green Lake on Raoul Island in the Kermadec archipelago about 1000 km northeast of New Zealand. Spirochaeta thermophila is a thermophilic obligately anaerobic spirochete. This organism has been isolated from brackish and marine hot springs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1523119049438184Island text4.3218436.178347.4845Neighbours18BLASTN52311.gbk
237150039077519276Island text1.8581221.622736.1189Neighbours18BLASTN+371500.gbk
3447889*47303325145Island text1.9000831.308130.3921Neighbours360BLASTN+447889.gbk
4591291*60937118081Island text1.5793723.16742.6544Neighbours18BLASTN591291.gbk
5762710*78433821629Island text2.0384123.70237.9766Neighbours360BLASTN762710.gbk
61163576*120142437849Island text1.6407326.79330.9182Neighbours360BLASTN1163576.gbk
71594396161807423679Island text1.7536824.639934.5571Neighbours360+1594396.gbk
81690272*173748147210Island text2.9200739.449636.8839Neighbours360BLASTN+IslandViewer 1690272.gbk
92205130223617831049Island text3.1700433.649149.289Neighbours360BLASTN2205130.gbk