Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014483: Paenibacillus polymyxa E681 chromosome, complete genome

NCBI: NC_014483

Host Lineage: Paenibacillus polymyxa; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Paenibacillus polymyxa was isolated from soil and is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Plants treated with Paenibacillus polymyxa have increased resistance to plant pathogens and increased drought resistance. This organism has been shown to produce a number of compounds with antifungal or antibacterial activity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
139729*6014620418Island text1.5346835.037148.886Neighbours37BLASTN39729.gbk
219532121643021110Island text1.7332234.903249.2882Neighbours37BLASTN+195321.gbk
3562594*58426921676Island text1.5493834.327241.8677Neighbours31BLASTN+IslandViewer 562594.gbk
41146682116723120550Island text3.9213134.136715.6201Neighbours21BLASTN+IslandViewer 1146682.gbk
51179286119909919814Island text1.5480134.270151.7765Neighbours37BLASTN+1179286.gbk
61376500139831321814Island text1.6558838.488750.466Neighbours37BLASTN+1376500.gbk
71431352145448523134Island text2.3172333.505640.6383Neighbours21BLASTN1431352.gbk
81604000*163332829329Island text4.3428434.157222.1107Neighbours21BLASTNIslandViewer 1604000.gbk
91954856*197680221947Island text1.579436.050648.4605Neighbours37BLASTN+1954856.gbk
101973233*199883225600Island text1.4220533.572549.1107Neighbours37BLASTN1973233.gbk
112334500236409929600Island text1.5343138.848139.5942Neighbours37BLASTNIslandViewer 2334500.gbk
123235968325840022433Island text1.6153533.739745.9069Neighbours37BLASTN+3235968.gbk
133339926336209922174Island text3.473533.526926.2699Neighbours21BLASTN+IslandViewer 3339926.gbk
143498395*352174423350Island text1.5269940.764146.7489Neighbours37BLASTN3498395.gbk
153629282364794018659Island text2.334433.393126.5319Neighbours21BLASTN+IslandViewer 3629282.gbk
164532000*458655454555Island text1.7898248.116528.8495Neighbours315BLASTN+IslandViewer 4532000.gbk
174740214*476409923886Island text3.2289631.55415.5317Neighbours21BLASTN4740214.gbk
184772856479609923244Island text1.5130633.882554.6352Neighbours37BLASTN4772856.gbk
194891100490915518056Island text1.5281133.621149.3605Neighbours37BLASTN+4891100.gbk
204957315498233125017Island text1.5536140.030144.4985Neighbours37BLASTN+4957315.gbk
215015890503709921210Island text2.8477333.381832.7933Neighbours21+5015890.gbk