Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014471: Ignisphaera aggregans DSM 17230 chromosome, complete genome

NCBI: NC_014471

Host Lineage: Ignisphaera aggregans; Ignisphaera; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Country: New Zealand; Environment: Fresh water, Hot spring; Isolation: hot springs in Rotorua and Tokaanu, New Zealand; Temp: Hyperthermophile; Temp: 92C. Ignisphaera aggregans is a hyperthermophilic crenarchaeote isolated from hot springs in Rotorua and Tokaanu, New Zealand.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
199926*12281322888Island text1.8626319.315418.6442Neighbours21BLASTN+99926.gbk
2135919*15908023162Island text2.3637224.53740.8218Neighbours21BLASTN+135919.gbk
3163404*18254919146Island text1.7253222.853835.9869Neighbours21BLASTN163404.gbk
421727924383826560Island text1.5888126.701542.4926Neighbours21217279.gbk
567450072877454275Island text1.6819323.74529.9822Neighbours21BLASTN+674500.gbk
684903287855729526Island text3.2012536.963329.1495849032.gbk
71068000*109112523126Island text2.6344121.838523.9493Neighbours21BLASTN1068000.gbk
81153438*119434640909Island text2.0023321.139731.2856Neighbours21BLASTN1153438.gbk
91269571*129807728507Island text2.7259837.498741.3296Neighbours21BLASTN1269571.gbk
101303634*132159917966Island text1.6312221.656137.5503Neighbours21BLASTN1303634.gbk
111841171*187799936829Island text2.8969931.050137.3884Neighbours21BLASTN+1841171.gbk