Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014448: Mycoplasma hyorhinis HUB-1 chromosome, complete genome

NCBI: NC_014448

Host Lineage: Mycoplasma hyorhinis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Mycoplasma hyorhinis HUB-1 was isolate from the respiratory tract of swine. Mycoplasma hyorhinis, though generally considered being a swine pathogen, is found most commonly infecting laboratory cell lines including human cells. Recently, an increasing body of work suggests that chronic infections of M. hyorhinis may cause oncogenic transformation. Infection with mycoplasma is a common problem in cell cultures, with Mycoplasma hyorhinis being the predominant species.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19419*3742128003Island text2.8101914.658822.4814Neighbours21BLASTN+9419.gbk
265000*8453719538Island text1.522211.399619.6339Neighbours21BLASTN65000.gbk
3183013*20820025188Island text1.7062212.345122.3244Neighbours21+183013.gbk
422541424821422801Island text1.5520212.42118.9183Neighbours21BLASTN+225414.gbk
5414784*45438539602Island text1.8596114.708520.1121Neighbours21BLASTN+414784.gbk
6487381*51116023780Island text2.0692313.844624.4624Neighbours21BLASTN487381.gbk
7626909*64844221534Island text1.5932414.218517.7488Neighbours21BLASTN626909.gbk
880310682644523340Island text1.4238112.335819.3385Neighbours21BLASTN803106.gbk