Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014414: Parvularcula bermudensis HTCC2503 chromosome, complete genome

NCBI: NC_014414

Host Lineage: Parvularcula bermudensis; Parvularcula; Parvularculaceae; Parvularculales; Proteobacteria; Bacteria

General Information: An obligately aerobic, NaCl-requiring, chemoheterotrophic Gram-negative bacterium. Parvularcula bermudensis was isolated from seawater collected from a depth of 10 meters at the Bermuda Atlantic Time Series station in the Sargasso Sea. This organism forms a new order within the alpha proteobacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116780318582918027Island text1.5188525.705318.2665Neighbours11BLASTN+167803.gbk
21104386*112320218817Island text1.4985927.021525.5055Neighbours11BLASTN+IslandViewer 1104386.gbk
31140357*118444444088Island text1.8677830.930924.872Neighbours11BLASTN+IslandViewer 1140357.gbk
41321963133987017908Island text1.5011723.93653.4109Neighbours111321963.gbk
52467639249042322785Island text1.5382422.123.8701Neighbours11BLASTN2467639.gbk
62491811251127919469Island text1.4934727.693319.3873Neighbours11BLASTN2491811.gbk
72540189256130021112Island text1.4919128.708721.5678Neighbours11BLASTN2540189.gbk
82569494*259225322760Island text1.8414224.433142.3567Neighbours11BLASTN2569494.gbk