Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014410: Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,

NCBI: NC_014410

Host Lineage: Thermoanaerobacterium thermosaccharolyticum; Thermoanaerobacterium; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Temp: Thermophile; Temp: 55-60C; An anaerobic, thermophilic Gram-positive bacterium. Thermoanaerobacterium thermosaccharolyticum, formerly Clostridium thermosaccharolyticum, produces a number of thermostable starch-degrading enzymes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18694*2877520082Island text2.3550622.200336.1372Neighbours21BLASTN8694.gbk
251711*9003438324Island text3.9617426.072148.2724Neighbours21BLASTN+51711.gbk
3403776*46022156446Island text3.8958822.853645.2547Neighbours21BLASTN+403776.gbk
448219350378621594Island text2.4235622.321135.3123Neighbours21BLASTN482193.gbk
5525645*55282627182Island text4.501327.447150.2619Neighbours21BLASTN525645.gbk
661599263822422233Island text2.0527319.257735.3027Neighbours21BLASTN615992.gbk
780050084758147082Island text2.7916835.048139.8937Neighbours21BLASTN+IslandViewer 800500.gbk
893759996249724899Island text1.8513321.294439.274Neighbours21BLASTN937599.gbk
9989698101209922402Island text1.9823918.704434.0358Neighbours21BLASTN+989698.gbk
101527405*154520617802Island text2.6623626.559944.6575Neighbours21BLASTN1527405.gbk
112149886*217220922324Island text2.2645621.309642.0027Neighbours21BLASTN+2149886.gbk
122329838235296223125Island text1.9843220.990438.2385Neighbours21BLASTN+2329838.gbk
132511753253648824736Island text1.6441121.692232.7318Neighbours21BLASTN2511753.gbk
142609588263448824901Island text1.7575920.862737.0386Neighbours21BLASTN+2609588.gbk