Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014408: Methanothermobacter marburgensis str. Marburg chromosome, complete

NCBI: NC_014408

Host Lineage: Methanothermobacter marburgensis; Methanothermobacter; Methanobacteriaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: Methanothermobacter marburgensis is named for the German city of Marburg and found in sewage. A species of thermophilic methanogenic archaea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1462195*48078518591Island text1.8465229.843551.206Neighbours328BLASTN462195.gbk
268268971892636238Island text3.9444542.918717.2606Neighbours328BLASTN682689.gbk
3806720*84338636667Island text3.4496742.141421.4928Neighbours328BLASTN806720.gbk
41018448103904920602Island text1.6669635.098528.2812Neighbours328BLASTN1018448.gbk
51193239121634823110Island text1.4838929.973220.4349Neighbours328BLASTN+1193239.gbk
61314382*133444020059Island text1.8144329.584350.2325Neighbours328BLASTN1314382.gbk
71340016136980829793Island text2.7375640.084223.4305Neighbours328BLASTN+1340016.gbk
81455851*147855522705Island text2.0262632.682437.0346Neighbours328BLASTN1455851.gbk