Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014394: Gallionella capsiferriformans ES-2 chromosome, complete genome

NCBI: NC_014394

Host Lineage: Gallionella capsiferriformans; Gallionella; Gallionellaceae; Gallionellales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Fresh water; Isolation: iron contaminated groundwater in Michigan, USA; Temp: Mesophile. An iron-oxidizing freshwater bacterium (FeOB) isolated from iron contaminated groundwater in Michigan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19334411691423571Island text1.5503432.502417.1641Neighbours41BLASTN93344.gbk
252200054414222143Island text1.4104731.104149.9147Neighbours41BLASTN522000.gbk
3707305*73388526581Island text1.4515333.876539.14Neighbours11BLASTN+707305.gbk
473836576007021706Island text1.6522432.963728.3911NeighboursBLASTN+738365.gbk
580873483220323470Island text1.7456432.587534.2586Neighbours41BLASTN+808734.gbk
694201596663724623Island text1.6624933.649827.6985Neighbours11BLASTN+942015.gbk
7993465*101611722653Island text1.5002832.131643.9213Neighbours11BLASTN+993465.gbk
81325616134634220727Island text1.6868234.057625.444Neighbours41BLASTN+1325616.gbk
91373602140662533024Island text2.100136.797643.4246Neighbours45BLASTN1373602.gbk
101554373158163927267Island text1.5232231.596542.7336Neighbours41BLASTN+1554373.gbk
111594071161958125511Island text1.7034133.46336.4107Neighbours41BLASTN+1594071.gbk
121626699164809921401Island text1.5989633.887518.3498Neighbours42BLASTN+1626699.gbk
131658357*168283924483Island text1.4868432.727431.5203Neighbours41BLASTN1658357.gbk
141815638*183865523018Island text1.4902130.812320.6115Neighbours41BLASTN+1815638.gbk
151989418201331023893Island text1.5865830.803116.22Neighbours41BLASTN+1989418.gbk
162111985*213209920115Island text1.7399234.190636.327Neighbours41BLASTN+2111985.gbk
172228470*225229223823Island text1.4912532.46648.8732Neighbours11BLASTN+2228470.gbk
182577949260071922771Island text1.7537331.456726.678Neighbours41BLASTN+2577949.gbk
192765261*278592820668Island text1.5383731.292633.8348Neighbours41BLASTN2765261.gbk
203036758307034433587Island text2.3332937.524341.0692Neighbours41BLASTN+3036758.gbk
213114648*313404119394Island text1.6399331.038720.5709Neighbours41BLASTN3114648.gbk