Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014393: Clostridium cellulovorans 743B chromosome, complete genome

NCBI: NC_014393

Host Lineage: Clostridium cellulovorans; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Soil; Isolation: cellulose digester; Temp: Mesophile. This mesophilic organism is able to degrade cellulose at rates comparable to thermophilic bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1925119251Island text5.6690924.581243.3956Neighbours21BLASTN1.gbk
219279*4462325345Island text1.6083119.094329.4472Neighbours21BLASTN19279.gbk
392500*13027937780Island text5.4146423.777945.0295Neighbours21BLASTN+92500.gbk
4139690*16309923410Island text4.8537323.282939.2406Neighbours21BLASTN+139690.gbk
5187454*23159944146Island text3.7050920.788538.4175Neighbours21BLASTN+187454.gbk
6503230*52309919870Island text3.1182718.435436.0235Neighbours21BLASTN+503230.gbk
769100070959918600Island text2.134518.379134.6144Neighbours21BLASTN691000.gbk
893700097266735668Island text2.3620.644133.4917Neighbours21BLASTN+937000.gbk
91022843104706224220Island text3.2725417.07234.0724Neighbours21BLASTN1022843.gbk
101221000124039419395Island text1.8509318.233228.8342Neighbours21BLASTN+1221000.gbk
111421122144515824037Island text1.475919.66231.4655Neighbours211421122.gbk
121590893*163877247880Island text1.9529220.640132.7337Neighbours21BLASTN1590893.gbk
131782811*180519922389Island text2.0446520.186928.7581Neighbours21BLASTN1782811.gbk
141901688192179720110Island text1.7466818.407531.1609Neighbours21BLASTN1901688.gbk
152771774*280609934326Island text1.7054222.57942.2091Neighbours21BLASTNIslandViewer 2771774.gbk
162868846289052521680Island text1.8866818.499636.3491Neighbours21BLASTN+2868846.gbk
172905248292643321186Island text1.8724818.617333.6899Neighbours21BLASTN+2905248.gbk
183055610307809922490Island text1.6972917.60429.9062Neighbours21BLASTN+3055610.gbk
193425694*347141745724Island text3.1752621.828437.6674Neighbours21BLASTN+IslandViewer 3425694.gbk
203494863351847923617Island text1.6551719.488831.6909Neighbours21BLASTN3494863.gbk
213650957366964218686Island text1.844617.734730.9843Neighbours21BLASTN+3650957.gbk
223979350399737718028Island text1.6071619.014521.1902Neighbours21BLASTN3979350.gbk
234323368434224518878Island text2.4223218.575935.2603Neighbours21BLASTN+4323368.gbk
244352216*438117228957Island text2.5858819.760336.6696Neighbours214352216.gbk
254482896*452909946204Island text2.5853921.802638.1897Neighbours21BLASTN+4482896.gbk
264541000*456644025441Island text5.0572324.54645.2996Neighbours21BLASTN+4541000.gbk
274612301463691224612Island text1.9864817.345631.435Neighbours21BLASTN+4612301.gbk
284646000466809922100Island text1.9865917.561433.4876Neighbours214646000.gbk
294775452483914063689Island text3.157430.992534.8718Neighbours21BLASTN+IslandViewer 4775452.gbk
304951742497192720186Island text2.0378919.496832.8725Neighbours21BLASTN4951742.gbk
314988127501003921913Island text2.6404618.613635.5159Neighbours21BLASTN+4988127.gbk