Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014392: Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome

NCBI: NC_014392

Host Lineage: Caldicellulosiruptor obsidiansis; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: USA; Environment: Hot spring; Habitat: Fresh water, Hot spring; Isolation: Obsidian Pool, Yellowstone National Park, USA; Temp: 55-85C. This species is an extremely thermophilic anaerobic bacteria, isolated from Obsidian Pool, Yellowstone National Park. It is a novel cellulolytic bacteria. Caldicellulosiruptor is a genus of thermophilic gram positive bacteria. These organisms produce a number of thermostable enzymes which may have industrial uses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135544337927123829Island text2.9381523.82334.9786Neighbours21BLASTN+IslandViewer 355443.gbk
2412916*43615223237Island text3.0135933.619650.2437Neighbours21BLASTN+412916.gbk
3848195*87355525361Island text1.9113825.405839.9212Neighbours21BLASTN848195.gbk
4969498*100915039653Island text2.7498129.411346.962Neighbours21BLASTN+969498.gbk
51769803181025940457Island text2.1539828.873846.308Neighbours21BLASTN+1769803.gbk
61935130*195903823909Island text1.6058521.555839.877Neighbours21BLASTN+1935130.gbk
72311243233205620814Island text1.5331525.475739.8785Neighbours21BLASTN+2311243.gbk
82350577*237486724291Island text3.5066239.900548.2707Neighbours21BLASTN+2350577.gbk
92513529*253999926471Island text1.5549123.632141.7225Neighbours21BLASTN+2513529.gbk