Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014391: Micromonospora aurantiaca ATCC 27029 chromosome, complete genome

NCBI: NC_014391

Host Lineage: Micromonospora aurantiaca; Micromonospora; Micromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Soil; Isolation: Soil; Temp: Mesophile; Temp: 37C. Micromonospora species are commonly isolated from soil, freshwater and marine environments. Like other actinomycetes Micromonospora species produce antibiotics, in addition a number strains are able to degrade natural and synthetic rubber.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116188*4462128434Island text2.7781115.133113.3672Neighbours11BLASTN+16188.gbk
227755529871021156Island text1.6067411.78879.49568Neighbours11BLASTN+277555.gbk
342154744451422968Island text1.4257914.846822.0185Neighbours11BLASTN421547.gbk
4621062*64468923628Island text1.8817410.65789.63577Neighbours11BLASTN+621062.gbk
51226922*125015223231Island text1.5632114.51315.885Neighbours11BLASTN1226922.gbk
61317957134023122275Island text1.4880311.849311.2498Neighbours11BLASTN+1317957.gbk
71812500*186094748448Island text2.5280715.156913.3009Neighbours11BLASTN+1812500.gbk
81910273196409853826Island text2.4374513.695212.0526Neighbours11BLASTN+1910273.gbk
91967167*200915941993Island text2.2494112.985910.7386Neighbours11BLASTN+1967167.gbk
102579919*261467434756Island text3.2075717.403615.6824Neighbours11BLASTN+2579919.gbk
112651315269455543241Island text1.5170216.831827.814Neighbours8BLASTN2651315.gbk
122875553*290609930547Island text1.9258311.624911.2536Neighbours11BLASTN2875553.gbk
133103000*312685623857Island text3.2440117.260916.4621Neighbours11BLASTN3103000.gbk
143445672346889423223Island text2.1246110.736912.2183Neighbours11BLASTN3445672.gbk
153596812361791421103Island text1.5625216.258429.8658Neighbours11BLASTN+3596812.gbk
164570567459134920783Island text1.8040211.743111.8711Neighbours11BLASTN4570567.gbk
174617688*463728919602Island text1.6013412.34612.2031Neighbours11BLASTN+4617688.gbk
184644500466983025331Island text2.0804515.546317.5866Neighbours11BLASTN+4644500.gbk
194672105*470459932495Island text1.9837514.329623.789Neighbours11BLASTN+4672105.gbk
206000834602389723064Island text1.8795813.361816.0769Neighbours11BLASTN+6000834.gbk
216175531*619392618396Island text1.4925315.16622.1677Neighbours11BLASTN6175531.gbk
226640327*665900418678Island text1.4945412.451411.3991Neighbours11BLASTN6640327.gbk
236710500673732426825Island text1.7998313.123813.7889Neighbours11BLASTN+6710500.gbk
246749156676941520260Island text1.5194712.098710.994Neighbours11BLASTN+6749156.gbk
256848475*686836219888Island text2.1914314.293517.0715Neighbours11BLASTN6848475.gbk