Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014378: Acetohalobium arabaticum DSM 5501 chromosome, complete genome

NCBI: NC_014378

Host Lineage: Acetohalobium arabaticum; Acetohalobium; Halobacteroidaceae; Halanaerobiales; Firmicutes; Bacteria

General Information: Country: Russia; Environment: Fresh water; Isolation: Lagoons from East Crimea, Arabat spit; Temp: Mesophile; Temp: 37C. Acetohalobium arabaticum is an obligate halophile and an acetogenic bacterium (one that produces acetate by reducing CO2).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14428*2422619799Island text1.7192319.123833.9749Neighbours21BLASTN+4428.gbk
2131810*15448322674Island text2.069523.465742.0654Neighbours21BLASTN131810.gbk
326106428176720704Island text2.8788518.055924.3659Neighbours21BLASTN261064.gbk
4425779*44976223984Island text1.9231822.363244.598Neighbours21BLASTN425779.gbk
5525717*55155125835Island text2.7016716.065821.5191Neighbours21BLASTN+525717.gbk