Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014377: Thermosediminibacter oceani DSM 16646 chromosome, complete genome

NCBI: NC_014377

Host Lineage: Thermosediminibacter oceani; Thermosediminibacter; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: Peru; Environment: Deep sea, Sediment, Soil; Isolation: Deep sea sediments (252 m below sea level); Temp: Thermophile; Temp: 52 - 76C. Thermosediminibacter oceani is an anaerobic thermophilic bacterium isolated from marine sediment 252 meters below sea level.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1112992*14783634845Island text2.0471936.173954.7253Neighbours357BLASTN+112992.gbk
2149288*17173322446Island text2.6004634.643653.1756Neighbours372BLASTN+149288.gbk
3210888*23415323266Island text1.3829636.898128.6637Neighbours32BLASTN+IslandViewer 210888.gbk
432194934430922361Island text2.4007337.081329.0683Neighbours22BLASTN+IslandViewer 321949.gbk
548015852859948442Island text1.8893636.613228.6505Neighbours21BLASTN+IslandViewer 480158.gbk
653281655737924564Island text1.5838835.982726.0803Neighbours32BLASTN+IslandViewer 532816.gbk
7669216*68857719362Island text2.0047934.545228.0241Neighbours22BLASTN+IslandViewer 669216.gbk
8961259*98976628508Island text1.8207435.177940.8933Neighbours21BLASTN+IslandViewer 961259.gbk
91060000108277422775Island text1.7135435.399438.5735Neighbours372BLASTN+1060000.gbk
101089894*110909919206Island text2.4768435.285747.4753Neighbours21BLASTN+1089894.gbk
111227850*127023442385Island text2.1608736.63724.524Neighbours21BLASTN+IslandViewer 1227850.gbk
121298806*131711218307Island text1.5692935.055934.8946Neighbours22BLASTN+1298806.gbk
131335963*136014724185Island text2.7549335.569755.9904Neighbours372BLASTN1335963.gbk
141400544142515024607Island text2.3629537.161733.8896Neighbours22BLASTNIslandViewer 1400544.gbk
151512217*153557423358Island text1.7716536.768226.6226Neighbours22BLASTN+1512217.gbk
161546124157234626223Island text2.2667636.197943.713Neighbours21BLASTN+1546124.gbk
171871333189060019268Island text1.84234.700338.7441Neighbours22BLASTN+1871333.gbk
181897857*192617728321Island text3.7256338.998233.3171Neighbours22BLASTN+IslandViewer 1897857.gbk
191943476197830134826Island text2.4705837.910318.3107Neighbours21BLASTN+IslandViewer 1943476.gbk
201985714*200946123748Island text1.5688135.414643.9457Neighbours32BLASTN+IslandViewer 1985714.gbk
212033781205707323293Island text2.2904835.739851.9366Neighbours22BLASTN+IslandViewer 2033781.gbk