Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014376: Clostridium saccharolyticum WM1 chromosome, complete genome

NCBI: NC_014376

Host Lineage: Clostridium saccharolyticum; Clostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Canada; Environment: Sludge; Isolation: Sewage sludge in Canada; Temp: Mesophile; Temp: 37C. This organism is able to metablolize a wide range of sugars. This organism was first isolated from a mixed cellulolytic culture started from sewage sludge and relies on the cellulolytic microorganism to provide sugars for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
16296*3008623791Island text2.1950134.890853.1401Neighbours32BLASTN+6296.gbk
2189319*21736928051Island text2.089131.93752.9764Neighbours21BLASTN+IslandViewer 189319.gbk
3317312*34011222801Island text1.4847931.590526.3552Neighbours32BLASTNIslandViewer 317312.gbk
4386650*41061323964Island text2.0245433.112553.5932Neighbours32BLASTN+386650.gbk
546068748198121295Island text1.9133829.413939.0364Neighbours37460687.gbk
659700063711840119Island text3.1968934.284125.5775Neighbours21BLASTN+IslandViewer 597000.gbk
7693820*71739923580Island text2.2981336.557658.2075Neighbours22BLASTN+693820.gbk
8787460*84751960060Island text2.1020132.560141.2744Neighbours21BLASTN+IslandViewer 787460.gbk
9869749*89064520897Island text2.6746630.153222.3901Neighbours21BLASTN+869749.gbk
1091606393409918037Island text1.851829.307544.4634Neighbours21+916063.gbk
111217000126133944340Island text1.9117929.776624.1302Neighbours21BLASTN+IslandViewer 1217000.gbk
121472304*152278950486Island text1.9516130.003540.9851Neighbours21BLASTN+IslandViewer 1472304.gbk
131586649160872922081Island text1.7617130.742329.8625Neighbours21BLASTNIslandViewer 1586649.gbk
141842290*186485622567Island text2.2849131.926938.2888Neighbours37BLASTN+IslandViewer 1842290.gbk
151879000189825519256Island text1.8525730.195838.6162Neighbours21BLASTN+1879000.gbk
162766326279028923964Island text1.9764330.660326.6476Neighbours21BLASTN2766326.gbk
172921769*295260130833Island text2.0745829.881723.0299Neighbours21BLASTNIslandViewer 2921769.gbk
182964731*300604241312Island text2.4450433.528934.5911Neighbours21BLASTN+IslandViewer 2964731.gbk
193009403304125331851Island text1.8364930.712523.7514Neighbours21BLASTN+IslandViewer 3009403.gbk
203064787*308790423118Island text1.6440530.979739.4585Neighbours21BLASTN+IslandViewer 3064787.gbk
213214222*323659922378Island text1.6046130.63144.5919Neighbours32BLASTN+3214222.gbk
223399366*342191022545Island text1.9567531.117521.8852Neighbours21BLASTN+IslandViewer 3399366.gbk
233547218357009922882Island text1.9991926.082217.5783Neighbours32BLASTN+IslandViewer 3547218.gbk
243593500361161018111Island text1.6909828.954938.1472Neighbours32BLASTN+3593500.gbk
253671441*369455323113Island text1.7978231.801946.1056Neighbours32BLASTN+3671441.gbk
263732547*377846945923Island text1.9588830.899427.4567Neighbours21BLASTNIslandViewer 3732547.gbk
273796990*382056323574Island text1.5253743.931436.846Neighbours31BLASTNIslandViewer 3796990.gbk
284048728*406728818561Island text1.6037629.11340.1206Neighbours37BLASTN4048728.gbk
294369666*439393824273Island text2.1144928.389515.4343Neighbours21BLASTN+4369666.gbk