Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014366: Gamma proteobacterium HdN1, complete genome

NCBI: NC_014366

Host Lineage: gamma proteobacterium HdN1; unclassified Gammaproteobacteria; ; ; Proteobacteria; Bacteria

General Information: Denitrification.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1354000*37668422685Island text1.5607433.760953.1124Neighbours11BLASTN+354000.gbk
2478000*50156823569Island text1.5626528.248540.1734Neighbours42BLASTN+IslandViewer 478000.gbk
358834761001621670Island text1.556829.881216.1269Neighbours11BLASTN+IslandViewer 588347.gbk
41435785*146660130817Island text1.9139933.833628.6462Neighbours41BLASTNIslandViewer 1435785.gbk
51663034168620823175Island text1.7762726.684131.7639Neighbours11BLASTN1663034.gbk
61814000*183684822849Island text1.53826.766251.0111Neighbours14BLASTN+1814000.gbk
72393702*241689423193Island text1.4918627.97339.9622BLASTNIslandViewer 2393702.gbk
82427968245009922132Island text1.4358226.67826.0141Neighbours17BLASTN+2427968.gbk
92513352253124917898Island text1.5347426.83344.7436Neighbours172513352.gbk
102703226272828325058Island text1.4394126.191650.3228Neighbours11BLASTN2703226.gbk
112826575285281526241Island text1.5666328.926420.7687Neighbours11BLASTN+IslandViewer 2826575.gbk
122904500292209917600Island text1.498538.41249.6894Neighbours41IslandViewer 2904500.gbk
133555425358872233298Island text1.5386631.280433.0125Neighbours11+IslandViewer 3555425.gbk
143653190*367610422915Island text1.5662528.021632.4826Neighbours41BLASTN+3653190.gbk