Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014365: Desulfarculus baarsii DSM 2075 chromosome, complete genome

NCBI: NC_014365

Host Lineage: Desulfarculus baarsii; Desulfarculus; Desulfarculaceae; Desulfarculales; Proteobacteria; Bacteria

General Information: Country: Germany; Environment: Mud; Isolation: Ditch mud; Germany; Temp: Mesophile. Anaerobic, sulfate-reducing Gram-negative bacterium capable of complete oxidation of organic compounds to CO2.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11094516113219037675Island text2.2965134.649927.9621Neighbours11BLASTNIslandViewer 1094516.gbk
22004332203313528804Island text2.3396830.260626.3825Neighbours11BLASTN+IslandViewer 2004332.gbk
32037506*206774830243Island text1.8471627.777323.0498Neighbours11BLASTN+IslandViewer 2037506.gbk
42359760*238225722498Island text1.4804121.935836.661Neighbours11BLASTN2359760.gbk
52810405283837427970Island text1.9159826.113125.3831Neighbours11BLASTN+IslandViewer 2810405.gbk
62843126287814035015Island text2.2388728.519132.0858Neighbours11BLASTN+IslandViewer 2843126.gbk
72888897*291246923573Island text1.7136425.383526.5182Neighbours11BLASTN+IslandViewer 2888897.gbk
83123853315277428922Island text2.6313834.248526.3175Neighbours11BLASTN+IslandViewer 3123853.gbk