Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014364: Spirochaeta smaragdinae DSM 11293 chromosome, complete genome

NCBI: NC_014364

Host Lineage: Spirochaeta smaragdinae; Spirochaeta; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Country: Congo; Environment: Oil fields; Isolation: Oil field of Congo, Africa; Temp: Mesophile; Temp: 35C. Spirochaeta smaragdinae was isolated from an oil field in Central Africa. The species is Gram-negative, motile, obligately halophilic and strictly anaerobic and is of interest because it is able to ferment numerous polysaccharides.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111100013024919250Island text1.6360534.22132.9151Neighbours21BLASTN+IslandViewer 111000.gbk
239489947378378885Island text4.2131244.158921.4703Neighbours21BLASTN+IslandViewer 394899.gbk
366784172576157921Island text1.9787236.475918.7492Neighbours21BLASTN+IslandViewer 667841.gbk
477350079310519606Island text1.7493333.253335.4915Neighbours23BLASTN+IslandViewer 773500.gbk
581534687725361908Island text1.9770138.500723.3994Neighbours23BLASTN+IslandViewer 815346.gbk
6894373*92505930687Island text2.0339638.071116.6571Neighbours312BLASTN894373.gbk
71116439115550739069Island text1.7703836.158520.6015Neighbours312BLASTN+1116439.gbk
81263427*128681823392Island text1.5236335.688223.2245Neighbours38BLASTN+1263427.gbk
91899983192142321441Island text1.6404535.730953.1838Neighbours38+1899983.gbk
101990000201321823219Island text1.5691534.505731.2157Neighbours312BLASTN+1990000.gbk
112111685*214167229988Island text2.9731341.505920.8614Neighbours32BLASTN+IslandViewer 2111685.gbk
122246524*228373637213Island text2.1823237.535121.864Neighbours21BLASTN+IslandViewer 2246524.gbk
132322269*237955957291Island text2.5841739.769223.8472Neighbours21BLASTN+IslandViewer 2322269.gbk
142562281*258498622706Island text1.690335.493726.9711Neighbours312BLASTN+2562281.gbk
152670000269281122812Island text1.5056234.259545.1517Neighbours380BLASTN+IslandViewer 2670000.gbk
162693840271486821029Island text1.820635.97720.6034Neighbours312BLASTN+2693840.gbk
172717865274749329629Island text2.2263738.43917.8549Neighbours38BLASTNIslandViewer 2717865.gbk
182751662*277374122080Island text1.6396936.181927.5565Neighbours312+2751662.gbk
192863686288928525600Island text1.8179537.601339.7025Neighbours23BLASTN+2863686.gbk
202904443292947025028Island text1.923836.933329.0544Neighbours23IslandViewer 2904443.gbk
212976748299573018983Island text1.762434.420651.7054Neighbours380BLASTN+2976748.gbk
223001597303396632370Island text3.1700343.507922.2082Neighbours312BLASTN+IslandViewer 3001597.gbk
233238374325728818915Island text1.8293833.788335.861Neighbours23BLASTN+3238374.gbk
243286459330579419336Island text1.5349834.584841.3652Neighbours23BLASTN+3286459.gbk
253500041352601825978Island text1.7722537.625223.0687Neighbours23BLASTN+IslandViewer 3500041.gbk
263633291365217518885Island text1.7930633.198630.6249Neighbours21BLASTN+3633291.gbk
273707311373658229272Island text2.4911141.432327.8014Neighbours23BLASTN+IslandViewer 3707311.gbk
284416467*443586119395Island text1.8073833.841525.9329Neighbours23+4416467.gbk
294488875453657247698Island text2.5253840.79519.3155Neighbours312BLASTN+IslandViewer 4488875.gbk
304578408460745829051Island text1.7467434.442631.2008Neighbours21BLASTN+IslandViewer 4578408.gbk