Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014363: Olsenella uli DSM 7084 chromosome, complete genome

NCBI: NC_014363

Host Lineage: Olsenella uli; Olsenella; Coriobacteriaceae; Coriobacteriales; Actinobacteria; Bacteria

General Information: Isolation: Human gingival crevice; Temp: Mesophile; Temp: 37C. The bacteria are nonmotile, Gram-positive rods that occur singly, in pairs, and in short chains; the central part of the cell may swell particularly when grown on solid medium. This strain is microaerotolerant to anaerobic and grows optimally at 37 degrees Celsius. Olsenella uli (formerly Lactobacillus uli) has been isolated from human gingival crevices and periodontal pockets.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18228*3606827841Island text3.3665131.790534.0022Neighbours11BLASTN8228.gbk
2114239*17409959861Island text2.1124323.110826.291Neighbours11BLASTN+114239.gbk
323238526542733043Island text3.3211333.298528.6159Neighbours11BLASTN+232385.gbk
4427393*45513427742Island text1.7055322.949526.2082Neighbours11BLASTN427393.gbk
548004950431124263Island text1.6193625.875517.4199Neighbours11BLASTN480049.gbk
6645397*68181236416Island text2.5017926.299334.0701Neighbours11BLASTN645397.gbk
71344768137015325386Island text3.0668325.20127.3111Neighbours11BLASTN1344768.gbk
81396912142521328302Island text2.8364130.991930.8546Neighbours11BLASTN+1396912.gbk
91605349162359918251Island text1.5297621.944924.1107Neighbours11BLASTN1605349.gbk
101680578170738226805Island text1.7048823.725917.8972Neighbours11BLASTN+1680578.gbk
111732417175606123645Island text1.7107521.588414.809Neighbours11BLASTN+1732417.gbk
121902868*192872325856Island text2.0383224.173220.51Neighbours11BLASTN+1902868.gbk
131973670199216618497Island text1.5351619.899126.1055Neighbours11BLASTN1973670.gbk
142035141*206649931359Island text2.1259323.447826.8951Neighbours11BLASTN2035141.gbk