Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014355: Candidatus Nitrospira defluvii, complete genome

NCBI: NC_014355

Host Lineage: Nitrospira defluvii; Nitrospira; Nitrospiraceae; Nitrospirales; Nitrospirae; Bacteria

General Information: This nitrite-oxidizing bacterium was found through enrichment from activated sludge from a municipal wastewater treatment plant. Phylogenetic analysis of 16S rRNA gene sequences revealed that the enriched bacteria represented a novel Nitrospira species closely related to uncultured Nitrospira-like bacteria previously found in wastewater treatment plants and nitrifying bioreactors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1139324*16175222429Island text1.652830.518940.3625Neighbours11BLASTN+IslandViewer 139324.gbk
222000224092920928Island text1.5796326.275745.1955Neighbours11BLASTN+220002.gbk
3243543*26738223840Island text1.6725825.580629.1022Neighbours11BLASTN+243543.gbk
4288000*31011722118Island text1.3983126.167325.9471Neighbours11BLASTN+288000.gbk
5399938*41891618979Island text1.5605425.142923.4011Neighbours11BLASTNIslandViewer 399938.gbk
666500068537120372Island text2.1687326.249440.5616Neighbours11BLASTNIslandViewer 665000.gbk
778153780712925593Island text1.8010829.644546.1745Neighbours11BLASTN781537.gbk
884424886733223085Island text1.6522427.046240.9781Neighbours11844248.gbk
9880856*90362022765Island text1.7477828.437324.1479Neighbours11BLASTN+IslandViewer 880856.gbk
101223243124121017968Island text1.6038325.389125.0335Neighbours11BLASTN+1223243.gbk
111257105*128058723483Island text1.6097529.411953.0557Neighbours11BLASTN1257105.gbk
121461355148524023886Island text1.6511730.996942.7366Neighbours11BLASTNIslandViewer 1461355.gbk
131839670185981720148Island text1.4730227.979137.0813IslandViewer 1839670.gbk
141865003194366878666Island text1.805429.288934.753Neighbours11BLASTN+IslandViewer 1865003.gbk
152210884*223973028847Island text2.0068928.275332.2379Neighbours11BLASTN+IslandViewer 2210884.gbk
162321957235415032194Island text2.2327231.738632.4049Neighbours11BLASTNIslandViewer 2321957.gbk
172635500265916723668Island text2.8814734.087748.4851Neighbours14BLASTN+IslandViewer 2635500.gbk
182775979280529229314Island text2.2796529.692246.4862Neighbours14BLASTN+IslandViewer 2775979.gbk
193248386*327264124256Island text1.6404527.392250.8471Neighbours11BLASTN3248386.gbk
203398033342713329101Island text1.8711430.9546.181Neighbours11BLASTN+IslandViewer 3398033.gbk
213435343346146626124Island text1.5751331.598440.1552Neighbours11BLASTN3435343.gbk
223669470*368793218463Island text1.5734224.699133.0978Neighbours11+3669470.gbk
233951855397443522581Island text1.4484226.319322.1769Neighbours11BLASTN+IslandViewer 3951855.gbk
244151798*417550023703Island text1.8447628.283133.3369Neighbours11BLASTN+IslandViewer 4151798.gbk