Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014330: Brachyspira pilosicoli 95/1000 chromosome, complete genome

NCBI: NC_014330

Host Lineage: Brachyspira pilosicoli; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: The strain Brachyspira pilosicoli 95/1000 was isolated from a pig. Brachyspira pilosicoli is an anaerobic spirochete that colonizes the large intestine of various species of birds and animals and humans. It attaches to colonic enterocytes in a condition called 'intestinal spirochetosis', characterized by mild colitis, diarrhea and reduced growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113917515790318729Island text1.4951616.457927.8475Neighbours21BLASTN+139175.gbk
216986219337123510Island text2.4925312.916519.4603Neighbours21BLASTN+169862.gbk
319544722875533309Island text1.6157814.945527.2696Neighbours21BLASTN195447.gbk
4313813*33622522413Island text1.8597313.405919.9476Neighbours21BLASTN+313813.gbk
5337546*36009922554Island text1.6050413.898319.8989Neighbours21BLASTN+337546.gbk
650541254359938188Island text1.6427514.342124.2122Neighbours21BLASTN+505412.gbk
7609982*63359923618Island text1.6993314.903918.5726Neighbours21BLASTN609982.gbk
8697429*72243325005Island text1.9414218.253534.5519Neighbours21BLASTN+697429.gbk
976823281309944868Island text1.7346216.4621.2647Neighbours21BLASTN768232.gbk
10841841*86434222502Island text1.7892912.037923.3037Neighbours21BLASTN841841.gbk
11888366*91146423099Island text1.6369615.559628.0652Neighbours21BLASTN888366.gbk
1295250097205919560Island text1.5766515.082425.5654Neighbours21BLASTN952500.gbk
131010000103219022191Island text1.5972312.630722.7372Neighbours21BLASTN+1010000.gbk
141113145*114959936455Island text2.7056918.210631.1258Neighbours21BLASTN1113145.gbk
151324500134383619337Island text1.660514.798224.1016Neighbours21BLASTN1324500.gbk
161541874156409922226Island text1.3903315.0926.3918Neighbours21BLASTN+1541874.gbk
171593000*161238919390Island text2.2098314.266230.5092Neighbours21BLASTN+1593000.gbk
181685698*170971424017Island text2.2679215.837427.8592Neighbours21BLASTN1685698.gbk
191784515*180888324369Island text1.804415.529221.8402Neighbours21BLASTN1784515.gbk
201957725*197782020096Island text1.8692513.685627.0679Neighbours21BLASTN+1957725.gbk
212026193204718920997Island text1.589417.316229.4524Neighbours21BLASTN2026193.gbk
222268773*229259923827Island text1.8090115.728827.8465Neighbours21BLASTN+2268773.gbk
232409559*242845918901Island text1.7387814.082824.9787Neighbours21BLASTN+2409559.gbk
242457731*248719029460Island text1.7082915.004219.4121Neighbours21BLASTN+2457731.gbk
252520906*254409923194Island text1.4019316.202625.3685Neighbours21BLASTN+2520906.gbk