Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014329: Corynebacterium pseudotuberculosis FRC41 chromosome, complete

NCBI: NC_014329

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Strain FRC41 was isolated from the inguinal lymph node of a 12-year-old girl in France with necrotizing lymphadenitis. Corynebacterium pseudotuberculosis, an important animal pathogen, is the etiological agent of a disease that is commonly called caseous lymphadenitis (CLA) or cheesy gland. This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1844622*88980245181Island text1.5115838.033447.1668Neighbours17BLASTN844622.gbk
21041556107453432979Island text1.6255636.94346.9817Neighbours17BLASTN+1041556.gbk
31169674119345823785Island text1.4896536.594133.646Neighbours17BLASTN+1169674.gbk
41261480*128627824799Island text1.6173437.767545.6523Neighbours17BLASTN1261480.gbk
51298644*131713518492Island text1.6101736.788753.015Neighbours17BLASTN1298644.gbk
61328949134856019612Island text1.5185736.117934.6287Neighbours17BLASTN1328949.gbk
71407880*144498337104Island text1.5066536.727249.5589Neighbours17BLASTN1407880.gbk
82036812207507438263Island text1.7958641.5646.1249Neighbours17BLASTNIslandViewer 2036812.gbk