Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014318: Amycolatopsis mediterranei U32 chromosome, complete genome

NCBI: NC_014318

Host Lineage: Amycolatopsis mediterranei; Amycolatopsis; Pseudonocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Amycolatopsis mediterranei (strain U-32) is a Gram-positive bacterium used for industry-scale production of rifamycin, which plays a vital role in antimycobacterial therapy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136912533921649Island text1.5336712.585117.29Neighbours11BLASTN+3691.gbk
238138440145020067Island text1.7770812.712813.8092Neighbours11BLASTNIslandViewer 381384.gbk
352901055033621327Island text1.5413118.23528.0842Neighbours11BLASTN529010.gbk
41320170134146221293Island text1.5222112.131615.4928Neighbours11BLASTN+1320170.gbk
51537732*156155323822Island text1.5974510.97710.7443Neighbours11BLASTN+IslandViewer 1537732.gbk
62252417*228159929183Island text1.5860212.978421.3693Neighbours11BLASTN+IslandViewer 2252417.gbk
73947845*397099423150Island text1.4977511.472511.2133Neighbours11BLASTN3947845.gbk
85183975520609922125Island text1.553211.688420.8795Neighbours11BLASTN+IslandViewer 5183975.gbk
95586287*562248536199Island text1.9385713.583715.357Neighbours11BLASTN+IslandViewer 5586287.gbk
106108633613113322501Island text1.5716814.020613.1976Neighbours11BLASTN+6108633.gbk
116395392646309967708Island text1.9394612.745115.4301Neighbours11BLASTN+IslandViewer 6395392.gbk
126539137656352724391Island text2.3370913.457318.8868Neighbours11BLASTN+6539137.gbk
136817860*684509927240Island text2.7915316.268416.9Neighbours11BLASTN+IslandViewer 6817860.gbk
147333688735759923912Island text1.7718113.004115.6642Neighbours11BLASTN7333688.gbk
157480669*750464523977Island text2.386611.5099.31498Neighbours11BLASTN7480669.gbk
167821227*785959938373Island text1.5213512.38216.4313Neighbours11BLASTN+IslandViewer 7821227.gbk
178054689807342518737Island text1.53211.443115.2363Neighbours11BLASTNIslandViewer 8054689.gbk
188590078860983119754Island text1.4957811.654914.2892Neighbours11BLASTNIslandViewer 8590078.gbk
198687448870659919152Island text1.7326711.350912.3584Neighbours11BLASTN+IslandViewer 8687448.gbk
209120651*914722326573Island text1.6118711.43615.2942Neighbours11BLASTN9120651.gbk
219604367*963009925733Island text1.9809512.867518.0031Neighbours11BLASTN+IslandViewer 9604367.gbk
2210070730*1009932828599Island text2.1654716.874715.4988Neighbours11BLASTN+IslandViewer 10070730.gbk