Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014315: Nitrosococcus watsoni C-113 chromosome, complete genome

NCBI: NC_014315

Host Lineage: Nitrosococcus watsonii; Nitrosococcus; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Environment: Marine; Temp: Mesophile. This species, along with Nitrosococcus halophilus and Nitrosococcus oceani, are ammonia-oxidizing bacteria found within the gamma subdivision of Proteobacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111415113939725247Island text2.2880936.961329.6099Neighbours25BLASTN114151.gbk
222669324800321311Island text1.694343349.1509Neighbours310BLASTN226693.gbk
3352395*37271520321Island text1.6078933.224735.2372Neighbours310BLASTN352395.gbk
41042556107116728612Island text1.7824737.031540.6007Neighbours310BLASTN+1042556.gbk
51169910120958039671Island text1.7225931.950436.6354Neighbours310BLASTN+1169910.gbk
61249071126885319783Island text1.5168334.563547.32Neighbours310+1249071.gbk
71396990141834221353Island text2.1261835.334723.192NeighboursBLASTN1396990.gbk
81435243145679721555Island text1.5576433.807628.4139Neighbours11BLASTN+1435243.gbk
91463383148532721945Island text1.5705933.060836.9473Neighbours310BLASTN1463383.gbk
101668366*168627917914Island text2.0956431.648221.3363NeighboursBLASTN+1668366.gbk
111744485177156527081Island text1.9809836.885921.7355Neighbours310BLASTN+1744485.gbk
121907112192760620495Island text1.5620732.019143.1904Neighbours310BLASTN1907112.gbk
131956695197459917905Island text1.4983432.429545.2187NeighboursBLASTN1956695.gbk
142177277*220052023244Island text1.7439533.295832.1676Neighbours310BLASTN2177277.gbk
152239725*226027320549Island text1.9333334.91738.6344Neighbours310BLASTN+2239725.gbk
162327083*234656719485Island text1.5707333.394648.1951Neighbours310BLASTN2327083.gbk
172346927*237964732721Island text1.6387632.458851.1602Neighbours310BLASTN2346927.gbk
182485527*250964824122Island text1.7666834.785144.8581Neighbours310BLASTN2485527.gbk
192659479268272523247Island text1.507434.332428.9256Neighbours310BLASTN+2659479.gbk
202711852273409922248Island text1.6862633.949422.7433Neighbours310BLASTN+2711852.gbk
212787089281864431556Island text1.6295234.307730.6323Neighbours310BLASTN+2787089.gbk
222834000285616822169Island text1.7449538.71624.7344NeighboursBLASTN+2834000.gbk
233004125303317929055Island text2.7876238.603618.4503Neighbours25BLASTN+3004125.gbk
243207684323009922416Island text1.4915234.818826.4588Neighbours310BLASTN3207684.gbk
253278386*329744219057Island text1.6020532.064747.3078Neighbours310BLASTN3278386.gbk
263319865*334399924135Island text1.4296733.578631.4411Neighbours310BLASTN+3319865.gbk