Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014314: Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, complete

NCBI: NC_014314

Host Lineage: Dehalogenimonas lykanthroporepellens; Dehalogenimonas; ; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Dehalogenimonas lykanthroporepellens BL-DC-9 is a strictly anaerobic, reductively dechlorinating Gram-negative bacterium isolated from groundwater at a superfund (law designs to clean up sites contaminated with hazardous substances) site located near Baton Rouge, USA, in an area contaminated by high concentrations of several chlorinated alkanes and alkenes. Dehalogenimonas lykanthroporepellens is able to reductively dehalogenate polychlorinated alkanes such as 1,2,3-trichloropropane and 1,2-dichloroethane.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2385823858Island text1.9235335.096825.5404Neighbours346BLASTN+IslandViewer 1.gbk
2698729067620805Island text1.7572637.092726.1969Neighbours346BLASTN+IslandViewer 69872.gbk
3212579*23481922241Island text2.3727636.431732.8044Neighbours346BLASTN212579.gbk
423804328361945577Island text1.9107336.615422.9685Neighbours346BLASTN+IslandViewer 238043.gbk
5404315*43074926435Island text1.8528234.996538.6507Neighbours346BLASTN+IslandViewer 404315.gbk
644795747069022734Island text1.5711234.290835.0843Neighbours346BLASTN+447957.gbk
7576465*66546088996Island text1.9123734.086524.9983Neighbours32BLASTN+IslandViewer 576465.gbk
8755166*78070725542Island text1.6855132.3916.4027Neighbours346BLASTN+755166.gbk
91148000*118188033881Island text2.6547644.17231.0817Neighbours346BLASTN+IslandViewer 1148000.gbk
101230687*125593425248Island text2.8367838.40339.4184Neighbours346BLASTN+IslandViewer 1230687.gbk
111485500152955044051Island text1.865637.634728.1324Neighbours346BLASTN+IslandViewer 1485500.gbk