Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014311: Ralstonia solanacearum PSI07 chromosome, complete genome

NCBI: NC_014311

Host Lineage: Ralstonia solanacearum; Ralstonia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is a phytopathogen that is found in the soil and causes systemic wilting disease in many important food crops such as tomatoes, potatoes, bananas, tobacco, pepper, peanut, ginger, and eucalyptus. It can infect plants found in over 50 different families and this pathogen can be carried asymptomatically in some species.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*3063930639Island text2.1170324.32424.256Neighbours11BLASTN1.gbk
2198542*22228023739Island text1.9354520.271314.5587Neighbours11BLASTN+198542.gbk
326396331281348851Island text1.9553520.768722.9618Neighbours11BLASTN+263963.gbk
4804157*83084026684Island text3.4137127.639833.5219Neighbours11BLASTN+804157.gbk
5978761*101969640936Island text3.7121326.821935.0469Neighbours11BLASTN+978761.gbk
61106871*113044123571Island text2.179628.419926.5811Neighbours11BLASTN1106871.gbk
71309562133482725266Island text2.1352524.499822.6564Neighbours11BLASTN+1309562.gbk
81507945152659918655Island text1.9415424.916525.0601Neighbours11BLASTN+1507945.gbk
91545175156854523371Island text1.9241723.145222.6468Neighbours11BLASTN+1545175.gbk
101635408*166609930692Island text1.7529617.889718.3579Neighbours11BLASTN+1635408.gbk
111888686192334534660Island text1.7744421.346114.2565Neighbours11BLASTN+1888686.gbk
122385666240958423919Island text2.5097825.523124.1039Neighbours11BLASTN2385666.gbk
132606434263461028177Island text1.9188926.303916.754Neighbours11BLASTN+2606434.gbk
142733897275627422378Island text3.2408924.43835.2337Neighbours11BLASTN2733897.gbk
152781898*280478422887Island text1.5854119.327619.9781Neighbours11BLASTN2781898.gbk
162831620285473923120Island text2.5268326.126822.9382Neighbours11BLASTN+2831620.gbk
173076519312763551117Island text1.5168220.221324.4792Neighbours11BLASTN+3076519.gbk
183348102336835420253Island text1.5465119.8238.5857Neighbours11BLASTN+3348102.gbk