Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014310: Ralstonia solanacearum PSI07 megaplasmid, complete sequence

NCBI: NC_014310

Host Lineage: Ralstonia solanacearum; Ralstonia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is a phytopathogen that is found in the soil and causes systemic wilting disease in many important food crops such as tomatoes, potatoes, bananas, tobacco, pepper, peanut, ginger, and eucalyptus. It can infect plants found in over 50 different families and this pathogen can be carried asymptomatically in some species.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19464511404219398Island text1.6095120.555721.0805Neighbours11BLASTN+94645.gbk
227991230714327232Island text2.1531222.179931.076Neighbours11BLASTN+IslandViewer 279912.gbk
360789663811330218Island text2.451530.000638.7079Neighbours11BLASTN607896.gbk
478522080843023211Island text1.8007519.947729.1631Neighbours11BLASTN+785220.gbk
581197784548933513Island text2.1458523.237127.8732Neighbours11BLASTN+IslandViewer 811977.gbk
6845527*87228626760Island text1.7908718.490622.9931Neighbours11BLASTNIslandViewer 845527.gbk
71086183110566119479Island text1.5138219.430921.9515Neighbours11BLASTN+IslandViewer 1086183.gbk
81130344115859928256Island text2.6836126.412421.7569Neighbours11BLASTN+IslandViewer 1130344.gbk
91338936136813429199Island text2.0701530.091841.2577Neighbours11BLASTNIslandViewer 1338936.gbk
101413210144315829949Island text1.9581925.205931.8533Neighbours11BLASTN+IslandViewer 1413210.gbk
111750817176957018754Island text1.5642118.990219.3812Neighbours11BLASTNIslandViewer 1750817.gbk
121822751*187490652156Island text1.9483220.839522.5581Neighbours11BLASTN+IslandViewer 1822751.gbk
131900653192424223590Island text1.7634723.814527.9088Neighbours11BLASTNIslandViewer 1900653.gbk
142017927204220624280Island text2.1051823.23429.7657Neighbours11BLASTN+IslandViewer 2017927.gbk