Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014307: Ralstonia solanacearum CFBP2957 chromosome, complete genome

NCBI: NC_014307

Host Lineage: Ralstonia solanacearum; Ralstonia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is a phytopathogen that is found in the soil and causes systemic wilting disease in many important food crops such as tomatoes, potatoes, bananas, tobacco, pepper, peanut, ginger, and eucalyptus. It can infect plants found in over 50 different families and this pathogen can be carried asymptomatically in some species.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113659936599Island text2.3768925.869326.871Neighbours11BLASTN+1.gbk
2233045*26748434440Island text1.741121.048319.6498Neighbours11BLASTN+233045.gbk
3533975*55319119217Island text3.6163329.021936.2163Neighbours11BLASTN533975.gbk
493960197130531705Island text1.491221.543719.0462Neighbours11BLASTN+939601.gbk
51131241*115418622946Island text3.913227.923336.8848Neighbours11BLASTN+1131241.gbk
61271121*129359922479Island text1.8811124.396723.1701Neighbours11BLASTN+1271121.gbk
71619000*164009921100Island text2.3285425.084618.0921Neighbours11BLASTN+1619000.gbk
81765230178833523106Island text1.6387420.898625.8887Neighbours11BLASTN+1765230.gbk
91855356189754742192Island text1.628223.239923.3486Neighbours11BLASTN+1855356.gbk
102735934275888422951Island text1.3859418.816926.8547Neighbours11BLASTN2735934.gbk
112760347279668936343Island text1.6082420.883223.5929Neighbours11BLASTN+2760347.gbk
123179100320159922500Island text4.8684826.542540.5047Neighbours11BLASTN+3179100.gbk
133240430326038919960Island text1.8901818.798618.0412Neighbours11BLASTN+3240430.gbk