Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014299: Halalkalicoccus jeotgali B3 plasmid 2, complete sequence

NCBI: NC_014299

Host Lineage: Halalkalicoccus jeotgali; Halalkalicoccus; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Halalkalicoccus jeotgali is a species of non-motile cocci, Gram-variable, extreme halophilic archaeon isolated from shrimp jeotgal, a traditional Korean fermented seafood.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
182584*13650153918Island text1.8332635.496928.8961Neighbours12BLASTN+82584.gbk
221825224380225551Island text1.5785934.157527.9896Neighbours12BLASTN+218252.gbk