Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014298: Halalkalicoccus jeotgali B3 plasmid 1, complete sequence

NCBI: NC_014298

Host Lineage: Halalkalicoccus jeotgali; Halalkalicoccus; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Halalkalicoccus jeotgali is a species of non-motile cocci, Gram-variable, extreme halophilic archaeon isolated from shrimp jeotgal, a traditional Korean fermented seafood.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125178327467622894Island text1.5263739.433429.3932Neighbours12BLASTN251783.gbk
231096435042639463Island text1.568631.068532.7644Neighbours12BLASTN+310964.gbk