Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014297: Halalkalicoccus jeotgali B3 chromosome, complete genome

NCBI: NC_014297

Host Lineage: Halalkalicoccus jeotgali; Halalkalicoccus; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Halalkalicoccus jeotgali is a species of non-motile cocci, Gram-variable, extreme halophilic archaeon isolated from shrimp jeotgal, a traditional Korean fermented seafood.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2416224162Island text1.757825.543425.2238Neighbours11BLASTN1.gbk
247651054536068851Island text2.2768126.191322.4519Neighbours12BLASTN+476510.gbk
31037457106948332027Island text1.7624925.364225.8131Neighbours11BLASTN+1037457.gbk
41100997112431423318Island text3.3657431.816926.1664Neighbours11BLASTN+1100997.gbk
51282302130564923348Island text2.1952827.562615.0965Neighbours11BLASTN+1282302.gbk
61336773135459917827Island text1.7952821.105924.5706Neighbours12BLASTN+1336773.gbk
71574238*160109926862Island text3.8307837.435418.2006Neighbours12BLASTN1574238.gbk