Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014258: Pantoea vagans C9-1 plasmid pPag3, complete sequence

NCBI: NC_014258

Host Lineage: Pantoea vagans; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple. Pantoea vagans strains have been isolated from eucalyptus leaves showing symptoms of bacterial blightand die-back in Uganda, Uruguay and Argentina and from maize suffering from brown stalk rot in South frica.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
142262*8159939338Island text1.56738.880121.4368Neighbours41BLASTN+42262.gbk
212750014912621627Island text1.5626631.763721.9363Neighbours41BLASTN+127500.gbk
335584537624420400Island text1.5062735.574721.0196Neighbours41BLASTN+355845.gbk