Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014253: Methanohalobium evestigatum Z-7303 chromosome, complete genome

NCBI: NC_014253

Host Lineage: Methanohalobium evestigatum; Methanohalobium; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Isolation: Microbial mat community in Crimea, Russia; Country: Russia; Temp: Thermophile; Temp: 50C; Habitat: Fresh water; Isolation: mud from a salt lagoon. This is a species of extremely halophilic, methylotrophic, methanogenic, anaerobic bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114202618255840533Island text2.2065621.751111.1702Neighbours21BLASTN+142026.gbk
2312354*34601333660Island text3.2048522.386111.4181Neighbours21BLASTN+IslandViewer 312354.gbk
343194247809946158Island text2.0835219.568517.2825Neighbours21BLASTN+IslandViewer 431942.gbk
4575360*62093645577Island text1.5905422.138634.0821Neighbours21BLASTN+IslandViewer 575360.gbk
5729996*75223422239Island text1.7145121.023837.3458Neighbours21BLASTN729996.gbk
6795869*82085624988Island text2.2539220.639739.1974Neighbours21BLASTN795869.gbk
793326195180718547Island text1.6053619.449224.7777Neighbours21BLASTN933261.gbk
81010949103432823380Island text1.4489421.388638.9694Neighbours21BLASTN+1010949.gbk
91163783118683223050Island text1.8301519.600611.8142Neighbours21BLASTN+IslandViewer 1163783.gbk
101197005124210445100Island text2.3223120.11616.0121Neighbours21BLASTN+IslandViewer 1197005.gbk
111818000184162923630Island text1.6127918.658832.4035Neighbours21BLASTN1818000.gbk
121954024*197474620723Island text1.5560222.429331.2838Neighbours21BLASTN+1954024.gbk
132113233213667923447Island text1.951323.631636.16Neighbours21BLASTN+IslandViewer 2113233.gbk