Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014248: Nostoc azollae 0708 chromosome, complete genome

NCBI: NC_014248

Host Lineage: Trichormus azollae; Trichormus; Nostocaceae; Nostocales; Cyanobacteria; Bacteria

General Information: Isolation: water fern Azolla; Temp: Mesophile; Habitat: Host. Nostoc azollae, formerly Anabaena azollae, is a cyanobacterial symbiont of the water fern Azolla, commonly known as 'duckweed'. Nostoc azollae is a nitrogen-fixer and provides nitrogen to the host plant.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156200058019518196Island text1.5014726.988130.494NeighboursBLASTNIslandViewer 562000.gbk
261950064277523276Island text1.7130921.80233.8353Neighbours21BLASTN619500.gbk
3685656*70976324108Island text1.5703919.117829.3276Neighbours21BLASTN685656.gbk
4943198*96726124064Island text1.5196823.425333.4145Neighbours21BLASTNIslandViewer 943198.gbk
51072473*109780725335Island text1.7832534.011837.4979NeighboursBLASTN1072473.gbk
62654471*267359919129Island text1.5029422.288435.7413Neighbours21BLASTN+2654471.gbk
74642149*466118619038Island text1.9467719.046417.7448Neighbours21BLASTN+IslandViewer 4642149.gbk
85196353522029223940Island text1.3164919.157332.8176Neighbours21BLASTNIslandViewer 5196353.gbk