Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014222: Methanococcus voltae A3 chromosome, complete genome

NCBI: NC_014222

Host Lineage: Methanococcus voltae; Methanococcus; Methanococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Isolation: Salt marsh; Temp: Mesophile; Habitat: Fresh water. This organism is a mesophilic methanogen commonly isolated from estuarine sediments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2264522645Island text1.3818214.694829.8514Neighbours21BLASTN+1.gbk
218687620859921724Island text1.6690421.751130.7528Neighbours21BLASTN+186876.gbk
3473510*49693823429Island text1.7043312.642926.4831Neighbours21BLASTN+IslandViewer 473510.gbk
457567259409918428Island text2.666113.214426.6659Neighbours21BLASTN575672.gbk
561344863251119064Island text1.8604213.521423.9615Neighbours21BLASTN+613448.gbk
6799229*82225123023Island text1.5340314.488119.8258Neighbours21BLASTN+799229.gbk
71045281*106833623056Island text1.6306113.545725.606Neighbours21BLASTN1045281.gbk
81156648*117659919952Island text1.4516514.190222.4449Neighbours21BLASTN1156648.gbk
91188719*121299924281Island text2.0991516.760428.3115Neighbours21BLASTN+1188719.gbk
101264000128849924500Island text2.0615521.013824.6002Neighbours21BLASTN1264000.gbk
111411155*143309921945Island text1.9634319.823424.3743Neighbours21BLASTN1411155.gbk
121437672146070623035Island text1.468618.245423.1697Neighbours21BLASTN1437672.gbk
131677610*170062523016Island text2.0212612.487828.4444Neighbours21BLASTN+1677610.gbk