Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014221: Truepera radiovictrix DSM 17093 chromosome, complete genome

NCBI: NC_014221

Host Lineage: Truepera radiovictrix; Truepera; Trueperaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: Isolation: Water sample from a hot spring runoffs; Country: Portugal; Temp: Thermophile; Temp: 50C; Habitat: Fresh water, Hot spring. Truepera radiovictrix is a radiation-resistant species was isolated from hot spring runoff on the Island of Sao Miguel in the Azores. The hot springs in this area discharge neutral to slightly alkaline water that may reach the boiling point. These strains form orange/red colonies, spherical-shaped cells, have an optimum growth temperature of about 50 degrees C, an optimum pH for growth between about 7.5 and 9.5, and do not grow at pH below 6.5 or above pH 11.2.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
138000*5888920890Island text1.6279916.777124.4813Neighbours11BLASTN+38000.gbk
278500*10313624637Island text3.0802923.602129.3722Neighbours11BLASTN+78500.gbk
316999619527425279Island text1.9836323.056719.709Neighbours11BLASTN+169996.gbk
4266638*29153224895Island text1.8140820.07123.5595Neighbours11BLASTN+266638.gbk
5398636*42395325318Island text2.0192823.107620.4938Neighbours11BLASTN+398636.gbk
655476457824523482Island text1.4050817.880618.1447Neighbours11BLASTN+554764.gbk
7591785*61728925505Island text2.4454521.095225.75Neighbours11BLASTN+591785.gbk
868753771209924563Island text2.5422524.908821.4544Neighbours11BLASTN+687537.gbk
979236381768725325Island text1.9448720.261728.4931Neighbours11BLASTN+792363.gbk
101167261118709119831Island text1.4977119.710622.5545Neighbours11BLASTN1167261.gbk
111277022*129617619155Island text1.6903516.915922.7525Neighbours11BLASTN+1277022.gbk
121518583*153820419622Island text1.7842117.555320.5689Neighbours11BLASTN+1518583.gbk
131541517*156539423878Island text1.4169620.215218.0351Neighbours11BLASTN+1541517.gbk
141786122181060724486Island text1.456423.510527.2993Neighbours11BLASTN+1786122.gbk
151932903195810725205Island text2.2481829.214128.1707Neighbours11+IslandViewer 1932903.gbk
162188250221159923350Island text2.002519.184223.5639Neighbours11BLASTN+IslandViewer 2188250.gbk
172392150*241624224093Island text1.6201322.397928.6271Neighbours11BLASTN+2392150.gbk
182943950*296869024741Island text1.9126621.383826.0072Neighbours11BLASTN2943950.gbk
193068222309398025759Island text2.4005322.167218.1687Neighbours11BLASTN+IslandViewer 3068222.gbk
203137952315789919948Island text1.6610116.099211.9138Neighbours11BLASTN+3137952.gbk
213175013*320035525343Island text2.0463723.396215.4434Neighbours11BLASTN3175013.gbk