Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014220: Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome

NCBI: NC_014220

Host Lineage: Syntrophothermus lipocalidus; Syntrophothermus; Syntrophomonadaceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolation: anaerobic granular sludge, thermophilic; Temp: Thermophile; Temp: 55C. Syntrophothermus lipocalidus is an anaerobic, thermophilic, syntrophic, fatty-acid-oxidizing bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1704909609925610Island text1.7161539.809632.7123Neighbours339BLASTN70490.gbk
217002119565925639Island text2.0668442.929635.7534Neighbours339BLASTN170021.gbk
348192350161019688Island text1.8636835.739950.9319Neighbours339BLASTN481923.gbk
458782661009922274Island text1.7716336.256751.5105Neighbours339BLASTN587826.gbk
5837926*85571217787Island text1.6810535.508944.5365Neighbours339837926.gbk
61162948118646423517Island text1.7719537.862947.6044Neighbours339BLASTN1162948.gbk
71269870*128997920110Island text1.7618335.081549.6026Neighbours339BLASTN1269870.gbk
81401065142035719293Island text1.6663136.536451.0781Neighbours339BLASTN1401065.gbk
91670000*168813518136Island text1.4922738.202226.5501Neighbours339BLASTN+1670000.gbk
101732254*175430622053Island text1.5593537.394231.5739Neighbours339BLASTN+1732254.gbk
111858747187983121085Island text1.6864636.647150.7796BLASTN+IslandViewer 1858747.gbk
122037560*205760220043Island text1.5182436.448244.5385Neighbours339BLASTN+2037560.gbk
132102000212412422125Island text1.7274338.10853.7489BLASTN+2102000.gbk
142239594*226249822905Island text2.2392636.43656.301Neighbours372BLASTN+2239594.gbk
152265882*228598020099Island text1.7834635.074253.149Neighbours339BLASTN2265882.gbk
162398334*242099922666Island text1.9845434.56853.1368BLASTN2398334.gbk