Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014219: Bacillus selenitireducens MLS10 chromosome, complete genome

NCBI: NC_014219

Host Lineage: Bacillus selenitireducens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolation: Anoxic muds of Mono Lake California; Country: USA; Temp: Mesophile; Habitat: Fresh water. Bacillus selenitireducens MLS-10 was isolated from alkaline, hypersaline, arsenic-rich mud from Mono Lake, California. This organism can reduce arsenate, selenate, and selenite, making it a potential bioremediation agent. Bacillus selenitireducens produces intracellular and extracellular granules of elemental selenium when grown on selenite. The respiratory arsenate reductase has been purified, and is able to function at high pH and alkalinity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125845*4812422280Island text1.5094736.083454.7143Neighbours324BLASTN+25845.gbk
283888*10707623189Island text1.6613441.624351.881Neighbours324BLASTN+83888.gbk
319255522201929465Island text1.6640133.449533.7954Neighbours21BLASTN+192555.gbk
4567033*58681719785Island text1.5334133.673850.6192Neighbours324BLASTN+567033.gbk
5830966*85890127936Island text4.0908640.696528.9055Neighbours21BLASTN+IslandViewer 830966.gbk
689482991978924961Island text1.6001332.487533.1737Neighbours37BLASTN+894829.gbk
797566099607520416Island text1.5273930.629929.9123Neighbours37BLASTN+975660.gbk
8999648102449324846Island text1.9725234.311427.5411Neighbours31BLASTN+999648.gbk
91736000*175959923600Island text1.6258934.228133.8076Neighbours21BLASTN1736000.gbk
102253023*227461221590Island text1.6374431.93431.2462Neighbours21BLASTN+IslandViewer 2253023.gbk
112284000231000626007Island text1.5829631.718123.1636Neighbours23BLASTN2284000.gbk
122491021251187120851Island text1.9338933.088146.58Neighbours37BLASTN2491021.gbk
132509062253298323922Island text1.6328230.979531.6726Neighbours21BLASTN+2509062.gbk
142875051*289906324013Island text1.5986831.903619.4908Neighbours37BLASTN+IslandViewer 2875051.gbk
152931796*295390522110Island text1.9148635.945150.2776Neighbours324BLASTN+2931796.gbk
162976642*299897022329Island text2.3496533.523126.6432Neighbours31BLASTNIslandViewer 2976642.gbk
173188128*321516027033Island text1.8983532.212617.9254Neighbours21BLASTN+IslandViewer 3188128.gbk
183254268*329570341436Island text7.3116744.16122.893Neighbours21BLASTN+IslandViewer 3254268.gbk