Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014218: Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome

NCBI: NC_014218

Host Lineage: Arcanobacterium haemolyticum; Arcanobacterium; Actinomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Blood, Host. Non-motile, non-sporulating, rod-shaped facultative anaerobe. Arcanobacterium haemolyticum originally Corynebacterium was identified as the causative agent for pharyngitis in 1946. This organism has also been implicated in cases of sepsis, osteomyelitis and skin infections.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14424*2609921676Island text2.5932337.882445.7046Neighbours19BLASTN4424.gbk
2253558*28008626529Island text1.9765432.633154.8849Neighbours19BLASTN+253558.gbk
353498655809923114Island text1.4302833.286752.2597Neighbours19BLASTN+IslandViewer 534986.gbk
4696409*71725420846Island text1.6485333.388146.1323Neighbours19BLASTN+696409.gbk
588211890872426607Island text2.8172743.590832.4518Neighbours19BLASTN+IslandViewer 882118.gbk
61163513*118653823026Island text1.5971234.435852.3145Neighbours19BLASTN+IslandViewer 1163513.gbk
71437931145819920269Island text1.6267232.739536.6016Neighbours19BLASTN+IslandViewer 1437931.gbk
81485568*150987224305Island text1.5065535.649739.5036Neighbours19BLASTN+1485568.gbk
91619982164236022379Island text1.6087930.210452.7104Neighbours19BLASTN+1619982.gbk
101663486*168642122936Island text1.7349332.08624.461Neighbours19BLASTN+IslandViewer 1663486.gbk
111689002171187222871Island text1.7152330.506723.2397Neighbours11BLASTN+IslandViewer 1689002.gbk
121948165*197034722183Island text1.6968936.58546.9287Neighbours19BLASTN1948165.gbk